Table 5 |
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|
miRNA targets identified in melon transcripts for potential ta-siRNAs derived from unigene c15d_05-D02-M13R_c |
|||||
|
Melon sRNA name |
sRNA sequence |
Targeted unigene |
Unigene sense |
Score (miRanda) |
Unigene annotation |
|
|
|||||
|
a11_156739_ |
AGTTTGCTTCTTGGGCTCTTC |
cA_05-B09-M13R_c |
Forward |
175 |
IAA16; transcription factor |
|
a11_156739_ |
AGTTTGCTTCTTGGGCTCTTC |
cPS_07-G03-M13R_c |
Forward |
175 |
IAA16; transcription factor |
|
a14_55988_ |
AGAGCCCAAGAAGCAAACTGG |
cCL678Contig1 |
Forward |
172 |
auxin efflux carrier family protein |
|
a24_92242_ |
AGAGCCCAAGAAGCAAACTG |
cCL678Contig1 |
Forward |
172 |
auxin efflux carrier family protein |
|
a33_151240_ |
CAGTTTGCTTCTTGGGCTCTT |
c15d_39-H01-M13R_c |
Forward |
171 |
ARF6 (AUXIN RESPONSE FACTOR 6); transcription factor |
|
a14_362833_ |
CGATGGTGATGGGATTTTTGA |
cCL1479Contig1 |
Reverse |
171 |
IAA9 (INDOLE-3-ACETIC ACID INDUCIBLE 9); transcription factor |
|
a14_362833_ |
CGATGGTGATGGGATTTTTGA |
cCL4756Contig1 |
Reverse |
175 |
ATAUX2-11 (AUXIN INDUCIBLE 2-11); DNA binding/transcription factor |
|
a14_362833_ |
CGATGGTGATGGGATTTTTGA |
cP5.72_c |
Reverse |
175 |
IAA7 (INDOLE-3-ACETIC ACID 7); transcription factor |
|
a33_203464_ |
CATTTTTTACGATGGTGATGG |
cCL3310Contig1 |
Forward |
179 |
ATUBP3 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3) |
|
a14_362833_ |
CGATGGTGATGGGATTTTTGA |
cCL3310Contig1 |
Forward |
175 |
ATUBP3 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3) |
|
a14_20904_ |
TACGATGGTGATGGGATTTTT |
cCL4210Contig1 |
Forward |
174 |
ubiquitin-associated (UBA)/TS-N domain-containing protein |
|
a11_156739_ |
AGTTTGCTTCTTGGGCTCTTC |
cCL1290Contig1 |
Forward |
171 |
binding/ubiquitin-protein ligase |
|
|
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|
Gonzalez-Ibeas et al. BMC Genomics 2011 12:393 doi:10.1186/1471-2164-12-393 |
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