Open Access Research article

Analysis of the melon (Cucumis melo) small RNAome by high-throughput pyrosequencing

Daniel Gonzalez-Ibeas1, José Blanca2, Livia Donaire3, Montserrat Saladié4, Albert Mascarell-Creus5, Ana Cano-Delgado5, Jordi Garcia-Mas4, Cesar Llave3 and Miguel A Aranda1*

Author Affiliations

1 Departamento de Biología del Estrés y Patología Vegetal, Centro de Edafología y Biología Aplicada del Segura (CEBAS) - CSIC, Apdo. correos 164, 30100 Espinardo (Murcia), Spain

2 Departamento de Biotecnología, Instituto de Conservación y Mejora de la Agrodiversidad Valenciana (COMAV) - UPV, Camino de Vera s/n, 46022 Valencia, Spain

3 Departamento de Biología Medioambiental, Centro de Investigaciones Biológicas (CIB) - CSIC, Ramiro de Maeztu 9, 28040 Madrid, Spain

4 IRTA, Center for Research in Agricultural Genomics CSIC-IRTA-UAB, Campus UAB, Edifici CRAG, Bellaterra (Cerdanyola del Vallès), 08193 (Barcelona), Spain

5 Molecular Genetics Department, Center for Research in Agricultural Genomics (CRAG) CSIC-IRTA-UAB, Campus UAB, Edifici CRAG, Bellaterra (Cerdanyola del Vallès), 08193 (Barcelona), Spain

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BMC Genomics 2011, 12:393  doi:10.1186/1471-2164-12-393

Published: 3 August 2011

Additional files

Additional file 1:

Length distribution of the small RNA data set for each library. Length distribution of melon sRNAs for each library (listed in Table 1). Sequence numbers are shown as a percentage of the total number of sequences obtained from every library. Data are given for total (with redundancy) and unique (no redundancy) sequences.

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Open Data

Additional file 2:

Known miRNA targets identified in melon unigenes. Complete set of all known miRNA targets identified in melon unigenes.

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Open Data

Additional file 3:

Novel melon-specific miRNA targets identified in melon unigenes. Complete set of all novel melon-specific miRNA targets identified in melon unigenes.

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Open Data