Table 6

Library SNP content

Library

SlM

SlF

SlFf

SdM

SdF

SmM

SvH

Ds


Contigs*

2909

5486

2287

2993

2912

4982

5028

6094

Contigs with SNPs

1221

1517

976

1333

1078

1709

1619

2513

SNPs

6648

6308

5576

6307

4653

7361

7381

12282

Substitutions

4847

5165

3873

5356

3516

5681

6402

9927

% Transitions/transversions

52/48

61/39

47/53

63/37

56/44

57/43

60/40

61/39

% heterozygous positions

0.39

0.19

0.43

0.38

0.28

0.26

0.27

0.32


* Only contigs assembled from at least 4 reads were considered. The total length of these contigs was used to calculate the percentage of heterozygous positions. All SNPs that are not due to substitutions are indels.

Blavet et al. BMC Genomics 2011 12:376   doi:10.1186/1471-2164-12-376

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