Table 4

BLASTX hits of contigs and singletons in the eight individual libraries with different proteomes

Library

Contigs


A. thaliana

V. vinifera

P. trichocarpa

Uniprot


%hit

% unique

%hit

% unique

%hit

% unique

%hit

% unique


SlM

31%

21%

31%

20%

33%

23%

41%

33%

SlF

76%

49%

76%

46%

78%

53%

78%

66%

SlFf

35%

24%

35%

24%

36%

26%

56%

47%

SdM

18%

13%

19%

13%

22%

14%

31%

22%

SdF

31%

22%

31%

21%

32%

24%

49%

43%

SmM

55%

35%

54%

33%

56%

39%

57%

48%

SvH

74%

48%

74%

45%

76%

52%

76%

64%

Ds

73%

47%

73%

43%

74%

51%

75%

63%



Library

Singletons


A. thaliana

V. vinifera

P. trichocarpa

Uniprot


%hit

% unique

%hit

% unique

%hit

% unique

%hit

% unique

SlM

14%

9%

16%

9%

21%

10%

32%

19%

SlF

42%

27%

44%

26%

46%

31%

47%

38%

SlFf

17%

11%

18%

11%

22%

12%

45%

30%

SdM

10%

6%

13%

6%

21%

7%

32%

14%

SdF

16%

10%

18%

10%

22%

11%

39%

25%

SmM

26%

17%

28%

17%

30%

20%

32%

25%

SvH

44%

30%

47%

29%

50%

33%

55%

41%

Ds

46%

33%

46%

32%

48%

36%

49%

42%


Table 4 shows the number of hits for both contigs and singletons. Non-redundant accessions are recorded in the '% unique' column. A cut-off E-value of 1E-4 was used for each database.

Blavet et al. BMC Genomics 2011 12:376   doi:10.1186/1471-2164-12-376

Open Data