Table 2

Expression differences among all eight libraries for the ten most frequently represented GO Slim terms

GO Slim term

Expression percentage


SlM

SlF

SlFf

SdM

SdF

SmM

SvH

Ds


Response to stress

2.3%

8.1%

2.3%

1.5%

2.8%

6.6%

8.2%

4.2%

Cellular component organization

2.6%

2.9%

2.0%

1.2%

2.0%

3.7%

3.5%

7.5%

Translation

1.3%

7.3%

1.8%

1.0%

4.7%

2.2%

3.4%

2.5%

Photosynthesis

2.2%

6.2%

2.3%

0.8%

2.7%

4.6%

3.8%

0.4%

Kinase activity

2.8%

2.7%

2.5%

0.8%

1.1%

3.2%

3.2%

4.6%

Cell communication

2.3%

2.2%

2.7%

1.2%

1.7%

2.1%

1.9%

2.2%

Signal transduction

2.2%

2.2%

2.6%

1.1%

1.6%

2.1%

1.9%

2.1%

Response to abiotic stimulus

1.0%

3.5%

1.2%

0.5%

1.2%

2.5%

3.1%

2.2%

Transcription

1.2%

1.8%

1.1%

0.8%

1.8%

1.3%

1.4%

1.4%

Response to biotic stimulus

0.4%

2.1%

0.4%

0.3%

0.5%

1.2%

1.4%

0.2%


(Biological processes and Molecular functions). For each library, the expression percentage is calculated as the number of reads included in contigs matching a term divided by the total number of reads included in all contigs. Terms are sorted by the total expression common to all libraries in descending order.

Blavet et al. BMC Genomics 2011 12:376   doi:10.1186/1471-2164-12-376

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