Open Access Research article

Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine

Emilie Chancerel12, Camille Lepoittevin12, Grégoire Le Provost12, Yao-Cheng Lin3, Juan Pablo Jaramillo-Correa4, Andrew J Eckert5, Jill L Wegrzyn5, Diana Zelenika6, Anne Boland6, Jean-Marc Frigerio12, Philippe Chaumeil12, Pauline Garnier-Géré12, Christophe Boury12, Delphine Grivet7, Santiago C González-Martínez7, Pierre Rouzé3, Yves Van de Peer3, David B Neale5, Maria T Cervera7, Antoine Kremer12 and Christophe Plomion12*

Author Affiliations

1 INRA, UMR1202 BIOGECO, F-33610 Cestas, France

2 Université de Bordeaux, UMR1202 BIOGECO, 33170 Talence, France

3 VIB, Department of Plant Systems Biology, Gent University, Technologie park 927, B-9052 Gent, Belgium

4 Instituto de Ecología, Universidad Nacional Autónoma de México, Ciudad Universitaria, Circuito Exterior, Apartado Postal 70-275, México, D.F

5 Department of Evolution and Ecology & Center for Population Biology, University of California at Davis, Davis, CA 95616, USA

6 CEA, Institut de Génomique, Centre National de Génotypage, 2 Rue Gaston Crémieux, CP 5721, 91057 Evry Cedex, France

7 INIA, Center of Forest Research (CIFOR), E-28040 Madrid, Spain

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BMC Genomics 2011, 12:368  doi:10.1186/1471-2164-12-368

Published: 18 July 2011

Additional files

Additional file 1:

cDNA libraries and sequencing.

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Additional file 2:

List of the 49 candidate gene fragments used for in vitro SNP detection.

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Additional file 3:

List of the 1,536 SNPs and associated features.

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Additional file 4:

Summary of the different types of markers combined with SNP markers for the construction of the G2 linkage maps.

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Additional file 5:

Genetic linkage maps for maritime pine: G2 Female and G2 Male, F2 and consensus.

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Additional file 6:

Number of SNP markers and contigs mapped on the G2 and F2 linkage maps.

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Additional file 7:

Number of orthologous markers mapped on the loblolly and maritime pine linkage groups.

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Additional file 8:

COS markers between TGI pine, TGI spruce and maritime pine unigene.

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