Table 4

List of consensus peptides specific to putative isoforms with a FDR < 2%

Gene ID

Gene Description

Peptide Specific to Putative Isoform

Mascot

Prot

Score

Mascot

Pep E-value

OMSSA

E-value

OMSSA

p-value

X!Tandem

Prot

Expect

X!Tandem

Pep

Expect

InsPecT

MQ

Score

InsPecT

p-value


7910490

prefoldin subunit 6

AEILQYQSQMQQQAAAASASA

69

3.1E-06

4.2E-04

1.6E-06

n.a.

n.a.

0.921

4.8E-03

7912171

peroxiredoxin

VENNDILFLSDPDAK

145

1.1E-09

2.8E-09

1.1E-11

-7.7

8.5E-04

n.a.

n.a.

VSGAEAVLAHL

145

6.6E-07

6.2E-06

6.1E-08

-7.7

1.6E-02

2.728

1.0E-05

7914158

hypothetical protein

ENALEAGQVVAVLAEGK

187

1.1E-10

4.7E-12

1.9E-14

n.a.

n.a.

3.375

1.0E-05

LPEKENALEAGQVVAVLAEGK

187

4.3E-05

1.4E-05

1.3E-07

-3

9.3E-04

n.a.

n.a.

7914461

UTP-glucose-1-phosphate uridylyltransferase Ugp1

APATETSNAGSFGK

296

2.5E-09

2.0E-04

1.0E-06

-15.6

5.0E-05

2.791

1.0E-05

7914540

conserved hypothetical protein

EFEDAAFALQPGQVSGIVDTASGVHLIER

109

3.2E-06

2.1E-07

6.4E-10

-7.2

4.2E-03

n.a.

n.a.

SKEEAIEILR

109

1.4E-04

4.3E-03

1.7E-05

-7.2

1.0E-02

1.705

1.0E-05

7916030

cyclophilin

SGELESEDKGSHEEL

216

4.0E-05

2.4E-03

2.8E-05

-1.7

2.0E-02

2.184

1.0E-05

7918378

14-3-3 family protein ArtA

EEAPAAEGEKPAAE

380

1.0E-07

1.5E-04

9.8E-07

-27.3

4.5E-04

1.901

1.0E-05

KEEAPAAEGEKPAAE

380

2.8E-11

4.2E-08

1.7E-10

-27.3

6.8E-07

2.991

1.0E-05

7919242

conserved hypothetical protein

VADVGTGTAIWLTDLAK

130

1.3E-09

1.6E-10

1.4E-12

-9.9

1.3E-05

3.067

1.0E-05

7919622

phosphofructokinase

NDQTSTIYSTTEIANIIK

61

4.1E-06

2.0E-06

1.2E-08

-3.4

3.9E-04

n.a.

n.a.

7919639

UDP-glucose 4-epimerase

FAVETAITDVINAQR

710

1.8E-12

2.7E-10

1.5E-12

-25.4

2.4E-06

2.187

1.0E-05

7919713

14-3-3 protein sigma, gamma, zeta, beta/alpha

DNLTLWTSSDGQEPEGAASK

129

6.8E-13

5.1E-12

2.8E-14

-8.3

5.3E-09

3.447

1.0E-05

7920463

ubiquinol-cytochrome C reductase complex core protein 2

FLSNDLPYFAELLAEVASQSK

131

3.6E-07

2.9E-09

1.3E-11

-13.4

1.4E-03

2.754

1.0E-05


Chang and Muddiman BMC Genomics 2011 12:358   doi:10.1186/1471-2164-12-358

Open Data