Additional file 9.
Pairwise comparison of chromosome-1 SNP haplotypes for eight sorghum accessions. Each main numbered horizontal plot represents one accession. Its seven minor plots represent pairwise genotype comparison of called SNPs with those in the other seven accessions. Only matches of the reference homozygote are shown. The color coding indicates windows of 50 SNPs with at least 30, 50, or 80% of genotypes in common between the two accessions (coded as S in the legend). Accessions 1-8 are BTx623, BTx430, P898012, Segaolane, SC35, SC265, PI653737 (S. propinquum), and 12-26 (S. bicolor ssp. verticilliflorum). Scale at bottom indicates physical positions of SNPs on chromosome.
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Nelson et al. BMC Genomics 2011 12:352 doi:10.1186/1471-2164-12-352