Additional File 3.

Hierarchical Cluster Analysis. RMA-summarized probe set intensities were used to hierarchically cluster (Euclidean means) all 207 isolates (top dendrogram) and all 10,208 genes (left dendrogram) in Spotfire. The heatmap shows RMA probe set intensities from low (green) to high (red). The top dendrogram is color-coded based on the 3 large clusters of E. coli.

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Jackson et al. BMC Genomics 2011 12:349   doi:10.1186/1471-2164-12-349