Table 2 |
||||||
|
Predicted miRNAs in A. auriculiformis and A. mangium. |
||||||
|
miRNA family |
mature miRNA sequence (5'-3') |
miRNA mismatch |
Length (nt) |
MFE |
GC % |
MFEI |
|
|
||||||
|
aau-miR319 |
uuggacugaagggagcucccu |
3 |
197 |
-68.9 |
41.1 |
0.85 |
|
aau-miR396 |
uuccacagcuuucuugaacug |
0 |
146 |
-63.0 |
44.5 |
0.97 |
|
aau-miR2086 |
gacaugaaugcagaacuggaa |
0 |
87 |
-23.4 |
39.1 |
0.69 |
|
aau-miR160 |
uggcauacagggagccaggca |
0 |
88 |
-29.4 |
56.8 |
0.59 |
|
aau-miR162 |
ucgauaaaccucugcauccag |
0 |
103 |
-40.0 |
48.5 |
0.80 |
|
aau-miR168 |
auucaguugaugcaaggcgggauc |
2 |
127 |
-57.8 |
59.1 |
0.77 |
|
aau-miR172 |
ugagaaucuugaugaugcugcau |
0 |
165 |
-59.6 |
40.6 |
0.89 |
|
amg-miR319 |
guggacugaaggaagcucucu |
0 |
182 |
-82.0 |
41.2 |
1.09 |
|
amg-miR396 |
uuccacagcuuucuugaacug |
0 |
145 |
-63.8 |
44.1 |
1.00 |
|
amg-miR2086 |
gacaugaaugcagaacuggaa |
0 |
87 |
-23.4 |
39.1 |
0.69 |
|
|
||||||
|
Wong et al. BMC Genomics 2011 12:342 doi:10.1186/1471-2164-12-342 |
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