Table 1

Data sets for our analyses.

Data set

# known genes

mean exon length (nt)

References/Description


CIDB-Serex-AG

1471

5179

http://ludwig-sun5.unil.ch/CancerImmunomeDB/ webcite

Exp-Serex-HAG

85

6266

collected by Prof. Meese's group

Exp-Serex-TAG

74

5986

collected by Prof. Meese's group

Exp-Chip-AG

298

4355

collected by Prof. Meese's group

Lit-PhageDisplay-TAG

84

4782

collected by Prof. Meese's group

Lit-AAG

348

4710

http://www.wiley-vch.de/contents/jc_2040/2005/25481_s.pdf webcite

ALL

2079

4906

union of the above antigen sets

ProteinCodingGenes

23583

3812

all protein coding genes retrieved from NCB1 excluding the above antigens

ProteinCodingGenesLongerExons

8816

5842

corresponds to ProteinCodingGenes with genes having exon lengths > 3100 nucleotides


These data sets are also available online: http://genetrail.bioinf.uni-sb.de/paper/ags/ webcite

Backes et al. BMC Genomics 2011 12:340   doi:10.1186/1471-2164-12-340

Open Data