Table 2

Regions of homozygosity (ROHs) detected in sets A and B.

Set A


Region ID

CFA

BP1

BP2

KB

NSNP

KB/SNP

Avg. Het

Group


SetA_01

1

57,121,838

67,829,167

10,707

84

127.5

0.02

*1

SetA_02

1

86,903,752

95,179,544

8,276

90

92.0

0.03

*2

SetA_03

1

112,558,604

120,632,074

8,073

71

113.7

0.05

*3

SetA_04

3

62,679,327

67,735,724

5,056

53

95.4

0.05

SetA_05

10

3,081,933

12,082,601

9,001

68

132.4

0.04

*4

SetA_06

12

48,950,221

55,687,381

6,737

63

106.9

0.04

SetA_07

26

3,116,745

12,410,004

9,293

107

86.9

0.01

*5

SetA_08

29

11,263,518

18,670,911

7,407

69

107.4

0.05


Set B


Region ID

CFA

BP1

BP2

KB

NSNP

KB/SNP

Avg. Het

Group


SetB_01

1

26,672,978

27,730,188

1,057

78

13.6

0.03

SetB_02

1

45,218,029

46,286,798

1,069

66

16.2

0.04

SetB_03

1

58,732,954

61,801,815

3,069

221

13.9

0.03

*1

SetB_04

1

62,722,220

65,190,321

2,468

129

19.1

0.03

*1

SetB_05

1

89,187,131

90,230,941

1,044

86

12.1

0.04

*2

SetB_06

1

102,454,189

103,320,473

866

51

17.0

0.04

SetB_07

1

116,688,554

118,107,497

1,419

97

14.6

0.03

*3

SetB_08

1

117,979,514

118,963,939

984

51

19.3

0.04

*3

SetB_09

2

22,715,411

24,024,566

1,309

78

16.8

0.04

SetB_10

3

3,030,299

3,903,071

873

59

14.8

0.04

SetB_11

5

4,697,408

6,247,457

1,550

105

14.8

0.04

SetB_12

6

25,815,666

26,601,998

786

52

15.1

0.04

SetB_13

6

42,437,711

43,955,158

1,517

60

25.3

0.04

SetB_14

6

58,580,737

59,356,441

776

62

12.5

0.04

SetB_15

9

3,529,583

4,304,182

775

58

13.4

0.04

SetB_16

10

5,626,769

6,702,961

1,076

51

21.1

0.04

*4

SetB_17

10

59,180,359

60,456,532

1,276

90

14.2

0.04

SetB_18

10

65,209,901

66,606,742

1,397

86

16.2

0.04

SetB_19

10

68,323,860

69,026,432

703

61

11.5

0.04

SetB_20

13

39,705,171

40,797,838

1,093

71

15.4

0.04

SetB_21

14

19,806,989

20,470,904

664

52

12.8

0.04

SetB_22

18

6,868,787

7,908,159

1,039

54

19.2

0.04

SetB_23

20

7,816,139

8,635,017

819

58

14.1

0.03

SetB_24

24

24,444,170

27,387,620

2,943

217

13.6

0.03

SetB_25

24

28,845,341

29,848,829

1,003

93

10.8

0.03

SetB_26

26

3,008,718

11,914,284

8,906

707

12.6

0.01

*5

SetB_27

30

38,126,268

38,689,821

564

52

10.8

0.04


CFA, Canis familiaris chromosome; BP1 and BP2, base pair positions of the first and last SNP involved in the ROH, respectively; NSNP, number of SNPs involved in the ROH; KB/SNP, SNP density in the ROH; Avg. Het, average observed heterozygosity. ROHs present in both sets are grouped numerically. Note that the end of SetB_07 overlaps with start of SetB_08.

Quilez et al. BMC Genomics 2011 12:339   doi:10.1186/1471-2164-12-339

Open Data