Table 1

Details of repeat clusters present in RsaI sequences identified by repeat finder http://zlab.bu.edu/repfind/form.html webcite

S. No.

Sequence ID

Repeat cluster

Location


1.

pDp1

CGTGAAC

1026,1033


ATGTGAA

485, 666, 721, 734


GTG

23, 41, 69, 161, 190, 198, 487, 668, 723, 736, 746, 780, 786, 800, 817, 832, 838, 879, 988, 1027, 1034, 1200


GTGA

163, 198, 487, 668, 723, 736, 786, 800, 817, 832, 988, 1027, 1034


GTGAA

487, 668, 723, 736, 817, 832, 1027, 1034


TGTGAA

486, 667, 722, 735, 831,


CGTGAA

816, 1026, 1033,


GGATTTT

140,147


2.

pDp2

AAACTATGG

209, 375,592


AAACTAT

209, 375, 468, 592


ATACATTTGT

498, 538


3.

pDp3

AACATT

469, 481, 488


TAT

15, 123, 139, 446, 451, 454, 464, 474, 583


Pathak and Ali BMC Genomics 2011 12:338   doi:10.1186/1471-2164-12-338

Open Data