Table 1

Deep tag sequencing statistics

    RefSeq

    GeneID

    Genscan

    RNAgenes

    total

    % of

    total

    % of

    unamb
.

    Averages/

    run


total reads (6 runs)

54072498

14042145

6265092

5244975

54072498

100.00%

9012083.00


unambiguous (6 runs)

24940641

3665152

779972

263786

29649551

54.83%

100.00%

4941591.83


0 mismatches

18084026

286158

5470

95713

18471367

62.30%

3078561.17


1 mismatch

3913853

1961500

102902

87180

6065435

20.46%

1010905.83


2 mismatches

2942762

1417494

671600

80893

5112749

17.24%

852124.83


ambiguous (6 runs)

15083422

4111901

240145

410907

19846375

36.70%

3307729.17


no matches (6 runs)

14042145

6265092

5244975

4570282

4570282

8.45%

761713.67


Summary statistics of the mapping of reads generated by the DGE pipeline.

Llorens et al. BMC Genomics 2011 12:326   doi:10.1186/1471-2164-12-326

Open Data