Table 2

Performance of contigs BLASTN against the 13 R. balthica mitochondrial genes with a cutoff value of < e-5

Velvet

NGen

ORK21

ORK31

Meta


Total number hits

560

209

85

99

82

Average total contig length

107

248

259

255

475

Average aligned contig length

45

90

83

79

216

# of contigs with > 80% identity

214

21

15

19

21

# of contigs with 100% identity

21

0

0

0

0

Summed aligned coverage

5696

5610

5332

5527

6143

Average % coverage per gene

0.55

0.54

0.51

0.53

0.58


Summed aligned coverage indicates the sum of the aligned region of contigs across the 13 mitochondrial genes. (ORK21/31: OASESk-mer = 21 & 31).

Feldmeyer et al. BMC Genomics 2011 12:317   doi:10.1186/1471-2164-12-317

Open Data