Table 2

Distribution of Simple Sequence Repeats in trout BAC end sequences.

Repeat

Type

Number

Repeat

Type

Number


Monomer

A/T

71

Tetramer

CACA/TGTG

38

C/G

1

TCTG/CAGA

37

Dimer

TG/CA

1346

TATG/CATA

26

AC/GT

1238

AGAC/GTCT

38

GA/TC

607

GAGA/TCTC

24

TA/TA

505

ACAT/ATGT

22

AG/CT

498

AGAA/TTCT

17

AT/AT

311

Other

370

Trimer

AAC/GTT

5

Pentamer

TCAAA/TTTGA

19

CAT/ATG

13

ATTTG/CAAAT

15

AAT/ATT

36

Other

92

ATA/TAT

36

Hexamer

356

TTA/TAA

24

Heptamer

80

Other

55

Octomer

278

Tetramer

ACAC/GTGT

26

Nanomer

144

TGTA/TACA

66

Decamer

478

ATAC/GTAT

23

CTCA/TGAG

25

Total

6,920


Genet et al. BMC Genomics 2011 12:314   doi:10.1186/1471-2164-12-314

Open Data