Table 1

Bioinformatically validated SNPs

17573 Sanger

17573 SOLiD

r1766

r02120

Sub-species comparison

MamuSNP

ENCODE

dbSNP


17573 Sanger


17573 SOLiD

1,056,266


r1766

22,665

412,920


r02120

5,734

103,323

328,910


Sub-species comparison

4,185

6,519

1,070

226


MamuSNP

389

781

159

33

19


ENCODE

29

76

14

7

0

1


dbSNP

11

12

5

0

0

0

0


egeno.assembly.hets

--

421,234

64,584

41,607

34,339

--

--

--


egeno.17573.SOLiD

--

--

109,485

61,941

9

--

--

--


egeno.r1766.frag

--

155,454

--

93,016

17

--

--

--


egeno.r02120.frag

--

41,836

69,424

--

3

--

--

--


egeno.sub-species comp

--

677

743

443

--

--

--

--


Unique non-overlapping validated SNPs identified in each pair-wise comparison are displayed. Validated SNPs were determined on the basis of both alleles at a genomic location being identified in at least two data sets and one of either multiple animals or multiple chemistries. Validated SNPs that fit into multiple cells were represented in the left-most appropriate cell.

Fawcett et al. BMC Genomics 2011 12:311   doi:10.1186/1471-2164-12-311

Open Data