Table 4

Frequencies and repeat numbers for the 20 most present SSR motifs

SSR motif

Counts

Average length

Counts/Mbp

% of the Total


AAC

352

18.21

20.77

19.0

AT

179

19.09

10.53

9.6

A

151

17.66

8.88

8.1

AG

98

20.36

5.77

5.3

AAG

95

19.55

5.59

5.1

AAAT

90

18.53

5.29

4.8

AAT

87

21.78

5.12

4.7

AAAAT

77

17.83

4.53

4.1

AC

68

19.15

4.0

3.7

AAAAG

41

18.34

2.41

2.2

ATC

37

20.08

2.18

2.0

AAAG

36

18.56

2.12

1.9

ACC

26

18.85

1.53

1.4

AAAAAT

22

22.91

1.29

1.2

AAATT

21

17.62

1.24

1.1

AATAT

20

16.75

1.18

1.1

AGG

18

20.67

1.06

1.0

AAAAC

18

17.0

1.06

1.0

ATAC

17

20.71

1.0

0.9


Barchi et al. BMC Genomics 2011 12:304   doi:10.1186/1471-2164-12-304

Open Data