Open Access Research article

Seeds for effective oligonucleotide design

Lucian Ilie1*, Silvana Ilie2, Shima Khoshraftar1 and Anahita Mansouri Bigvand1

Author Affiliations

1 Department of Computer Science, University of Western Ontario, N6A 5B7, London, ON, Canada

2 Department of Mathematics, Ryerson University, M5B 2K3, Toronto, ON, Canada

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BMC Genomics 2011, 12:280  doi:10.1186/1471-2164-12-280

Published: 1 June 2011

Additional files

Additional file 1:

This file contains all the seeds used in our tests. The contiguous, transition, and single spaced seeds are the same as in [20]. The multiple spaced seeds were computed using SpEED.

Format: PDF Size: 51KB Download file

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Open Data

Additional file 2:

This file contains the complete results of our tests for all the 50-mer data sets.

Format: XLSX Size: 58KB Download file

Open Data

Additional file 3:

This file contains the complete results of our tests for all the 70-mer data sets.

Format: XLSX Size: 58KB Download file

Open Data