Table 1

Summary of generated Ruditapes philippinarum ESTs and assembly results with statistics describing different properties of transcriptome contig sequences available in Ruditapes philippinarum Database (compgen.bio.unipd.it/RuphiBase)

Feature

Value


Sequences

454 reads

457,717

Sanger sequences

5,707


Assembled sequences

191,624


Contigs

First run of hybrid assembly

40,477


Meta-contigs of second assembly

4,990

Not re-assembled

27,616


Total (Ruditapes philippinarum transcriptome)

32,606

Mean length (bp)

546

Max length (bp)

2497

Mean Average quality (Phred)

39.2

Mean GC%

33.5


Milan et al. BMC Genomics 2011 12:234   doi:10.1186/1471-2164-12-234

Open Data