Table 2 |
|||||||
|
Polymorphisms in the regions of differences (RDs) in the tested SS2 strains |
|||||||
|
RD |
Genome position |
Direct Repeat |
GC content* |
Absence in strains |
Gene |
Annotation |
|
|
|
|||||||
|
Start |
End |
||||||
|
|
|||||||
|
RD1 |
93902 |
99882 |
99 bp |
34.64% |
607 |
SSU05_0100 |
unknown protein |
|
S735 |
SSU05_0101 |
unknown protein |
|||||
|
SS2-N |
SSU05_0102 |
hypothetical protein |
|||||
|
T15 |
SSU05_0103 |
hypothetical protein |
|||||
|
SSU05_0104 |
unknown protein |
||||||
|
SSU05_0105 |
hypothetical protein |
||||||
|
SSU05_0106 |
hypothetical protein |
||||||
|
SSU05_0107 |
hypothetical protein |
||||||
|
|
|||||||
|
RD2 |
478619 |
481517 |
7 bp |
42.64% |
SS2-N |
SSU05_0490 |
conserved hypothetical protein |
|
SSU05_0491 |
hydrolase (MutT family) |
||||||
|
SSU05_0492 |
ATP-binding subunit |
||||||
|
|
|||||||
|
RD3 |
834923 |
846186 |
15 bp |
30.71% |
05HAS68 |
SSU05_0862 |
site-specific recombinase |
|
ZF |
SSU05_0863 |
hypothetical protein |
|||||
|
607 |
SSU05_0864 |
replication initiator protein |
|||||
|
S735 |
SSU05_0865 |
hypothetical protein |
|||||
|
SS2-N |
SSU05_0866 |
hypothetical protein |
|||||
|
T15 |
SSU05_0867 |
hypothetical protein |
|||||
|
SSU05_0868 |
hypothetical protein |
||||||
|
SSU05_0869 |
hypothetical protein |
||||||
|
SSU05_0870 |
hypothetical protein |
||||||
|
SSU05_0871 |
hypothetical protein |
||||||
|
SSU05_0872 |
hypothetical cytosolic protein |
||||||
|
|
|||||||
|
RD4 |
1452704 |
1463847 |
19 bp |
36.95% |
05HAS68 |
SSU05_1513 |
site-specific recombinase |
|
1940 |
SSU05_1514 |
virulence-associated protein E |
|||||
|
ZF |
SSU05_1515 |
hypothetical protein |
|||||
|
607 |
SSU05_1516 |
hypothetical protein |
|||||
|
SS2-N |
SSU05_1517 |
hypothetical protein |
|||||
|
S735 |
SSU05_1518 |
hypothetical protein |
|||||
|
SSU05_1519 |
unknown protein |
||||||
|
SSU05_1520 |
unknown phage protein |
||||||
|
SSU05_1521 |
hypothetical protein |
||||||
|
SSU05_1522 |
hypothetical protein |
||||||
|
SSU05_1523 |
hypothetical protein |
||||||
|
SSU05_1524 |
hypothetical protein |
||||||
|
SSU05_1525 |
hypothetical protein |
||||||
|
SSU05_1526 |
transcriptional regulator |
||||||
|
SSU05_1527 |
transcriptional regulator |
||||||
|
SSU05_1528 |
Gp21 protein |
||||||
|
SSU05_1529 |
integrase |
||||||
|
SSU05_1530 |
integrase |
||||||
|
|
|||||||
|
* The average GC content of the 05ZYH33 chromosome is 41.1%. |
|||||||
|
Wu et al. BMC Genomics 2011 12:219 doi:10.1186/1471-2164-12-219 |
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