Table 3 |
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|
BRE loci genetic context in Bordetella genomes |
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|
B. pertussis genetic contexte |
B. bronchiseptica genetic contexte |
B. pararpertussis genetic contexte |
B. avium genetic contexte |
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|
|
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|
Locus # |
Rpts. nbr.a |
5' gene |
Std.b |
3' gene |
Std.b |
Rpts. nbr.a |
5' gene |
Std.b |
3' gene |
Std.b |
Rpts. nbr.a |
5' gene |
Std.b |
3' gene |
Std.b |
Rpts. nbr.a |
5' gene |
Std.b |
3' gene |
Std.b |
|
1 |
1 |
BP1052 |
> |
BP1053 |
> |
3 |
BB1365 |
> |
BB1366 |
> |
1 |
BPP1149 |
> |
BPP1150 |
> |
- |
- |
- |
- |
- |
|
2 |
2 |
BP1110 |
> |
BP1111 |
> |
8 |
BB2301 |
> |
BB2302 |
> |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
|
3 |
2 |
BP1793 |
> |
BP1794 |
< |
3 |
BB2270 |
> |
BB2271 |
< |
4 |
BPP2022 |
> |
BPP2023 |
< |
- |
- |
- |
- |
- |
|
4 |
1 |
BP2085 |
> |
BP2086 |
> |
2 |
BB3338 |
< |
BB3339 |
< |
1 |
BPP1769 |
> |
BPP1770 |
> |
- |
- |
- |
- |
- |
|
5 |
1 |
BP2549 |
> |
BP2550 |
< |
1 |
BB2072 |
> |
BB2073 |
< |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
|
6 |
1 |
BP3395 |
< |
BP3396 |
< |
2 |
BB3983 |
< |
BB3984 |
< |
1 |
BPP3548 |
< |
BPP3549 |
< |
- |
- |
- |
- |
- |
|
7 |
- |
- |
- |
- |
- |
1 |
BB1410 |
> |
BB1411 |
> |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
|
8 |
- |
- |
- |
- |
- |
2 |
BB2091 |
> |
BB2092 |
> |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
|
9 |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
3 |
BPP1903 |
> |
BPP1904 |
> |
- |
- |
- |
- |
- |
|
10 |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
1 |
BAV0696 |
> |
BAV0697 |
> |
|
11 |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
2 |
BAV2006 |
> |
BAV2007 |
> |
|
12 |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
3 |
BAV3179 |
> |
BAV3180 |
< |
|
13 |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
2 |
BAV3208 |
> |
BAV3209 |
< |
|
|
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|
a'Rpts. nbr.' = Number of Repeats. Number of repeated BRE elements at the specific locus. b'Std.' = Strand. Genomic orientation of flanking mRNAs. '>' = on positive strand: the strand given in the GenBank genome database; '<' = on negative strand: the complementary strand. |
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|
Hot et al. BMC Genomics 2011 12:207 doi:10.1186/1471-2164-12-207 |
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