Dot plots of non-Arabidopsis genome assemblies. Alignments of 3 Mbp, 6 Mbp, 9 Mbp and 12 Mbp pseudomolecules against the reference sequences are shown for coverage 15x linear + 5x paired. Studied genomes are V. vinifera (Vvi), O. sativa (Osa), P. trichocarpa (Ptr), S. bicolor (Sbi), and Z. mays (Zma). Red dots and lines denote matching regions in the correct orientation, blue denotes reversed orientation. The associated assembly scores are also shown.
Haiminen et al. BMC Genomics 2011 12:194 doi:10.1186/1471-2164-12-194