Dot plots of Arabidopsis assemblies. Alignments of the 3 Mbp Arabidopsis pseudomolecules compared to the reference sequence are shown for all 24 read mixture combinations (L = linear reads; P = paired reads). Red dots and lines denote matching regions in the correct orientation, blue denotes reversed orientation. Longer lines denote larger matching regions between the pseudomolecule and the reference sequence. The 15L-5P assembly with best quality scores is indicated with an arrow.
Haiminen et al. BMC Genomics 2011 12:194 doi:10.1186/1471-2164-12-194