Table 3

Estimated coverage of chromosomes by the common carp BACs. Zebrafish genome assembly 8 (zv8) were used for the calculation.

Chromosome

Size (bp)

Covered (bp)

Number of clones*

Coverage


1

59,305,620

28,385,015

132

47.86%


2

58,009,534

22,677,316

102

39.09%


3

60,907,308

31,396,678

148

51.55%


4

71,658,100

32,427,816

168

45.25%


5

74,451,498

35,726,625

164

47.99%


6

61,647,013

32,747,166

149

53.12%


7

76,918,211

46,016,985

220

59.83%


8

55,568,185

27,732,046

123

49.91%


9

54,736,511

37,568,203

176

68.63%


10

43,467,561

18,729,705

83

43.09%


11

44,116,856

24,200,149

108

54.85%


12

46,853,116

23,019,149

102

49.13%


13

50,748,729

33,185,367

153

65.39%


14

52,930,158

21,972,192

105

41.51%


15

47,237,297

23,826,254

111

50.44%


16

51,890,894

22,116,433

100

42.62%


17

49,469,313

35,083,736

161

70.92%


18

49,271,716

24,262,639

113

49.24%


19

48,708,673

19,679,618

87

40.40%


20

51,884,995

34,768,791

151

67.01%


21

47,572,505

18,049,644

89

37.94%


22

41,415,389

20,094,889

100

48.52%


23

44,714,728

24,485,475

115

54.76%


24

40,403,431

22,721,787

106

56.24%


25

38,768,535

10,635,174

51

27.43%


Total

1,322,655,876

671,508,852

3,117

50.77%


*BAC clones are counted only when they have two sequenced ends in the same chromosome with the correct orientation.

Xu et al. BMC Genomics 2011 12:188   doi:10.1186/1471-2164-12-188

Open Data