Table 1

Sequence statistics of the BES of common carp

BAC end sequencing reads

80,448


BES a

75,744


BES after trimming b

72,789(96.1%)


Redundant BES c

7,069


BES after filtering redudance

65,720


Average read length (bp)

647


BES mate-pairs d

29,046(88.4%)


Total bases sequenced

42,522,168


Vertebrates Repeat masked bases

7,356,797(17.3%)


a Number of sequences with phred base calling (quality score ≥ 20) with edited read length ≥50 bp

b Number of sequences free of E. coli and vector DNA, with edited read length ≥50 bp

c Number of sequences with 95% identity and full-length covered by selfblasting

d Number of clones with both ends successfully sequenced

Xu et al. BMC Genomics 2011 12:188   doi:10.1186/1471-2164-12-188

Open Data