Table 1 |
|
|
Sequence statistics of the BES of common carp |
|
|
BAC end sequencing reads |
80,448 |
|
|
|
|
BES a |
75,744 |
|
|
|
|
BES after trimming b |
72,789(96.1%) |
|
|
|
|
Redundant BES c |
7,069 |
|
|
|
|
BES after filtering redudance |
65,720 |
|
|
|
|
Average read length (bp) |
647 |
|
|
|
|
BES mate-pairs d |
29,046(88.4%) |
|
|
|
|
Total bases sequenced |
42,522,168 |
|
|
|
|
Vertebrates Repeat masked bases |
7,356,797(17.3%) |
|
|
|
|
a Number of sequences with phred base calling (quality score ≥ 20) with edited read length ≥50 bp b Number of sequences free of E. coli and vector DNA, with edited read length ≥50 bp c Number of sequences with 95% identity and full-length covered by selfblasting d Number of clones with both ends successfully sequenced |
|
|
Xu et al. BMC Genomics 2011 12:188 doi:10.1186/1471-2164-12-188 |
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