Table 3 |
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|
Orthologous Clusters and Coding Sequences (CDS) in the S. aureus Supragenome |
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|
Genome |
Orthologous Clusters (genes) |
CDS |
|||||||
|
|
|
||||||||
|
All |
Distributed |
Unique |
Non-core % |
All |
Core |
Distributed |
Unique |
Non-core % |
|
|
|
|||||||||
|
CGSSa00 |
2,534 |
266 |
2 |
11 |
2,701 |
2,410 |
289 |
2 |
11 |
|
CGSSa01 |
2,648 |
364 |
18 |
14 |
2,733 |
2,362 |
353 |
18 |
14 |
|
CGSSa03 |
2,628 |
358 |
4 |
14 |
2,765 |
2,389 |
372 |
4 |
14 |
|
COL |
2,543 |
270 |
7 |
11 |
2,649 |
2,374 |
268 |
7 |
10 |
|
JH1 |
2,643 |
377 |
0 |
14 |
2,796 |
2,382 |
414 |
0 |
15 |
|
JH9 |
2,643 |
377 |
0 |
14 |
2,796 |
2,382 |
414 |
0 |
15 |
|
MRSA252 |
2,645 |
376 |
3 |
14 |
2,788 |
2,393 |
392 |
3 |
14 |
|
MSSA476 |
2,553 |
275 |
12 |
11 |
2,643 |
2,370 |
261 |
12 |
10 |
|
Mu3 |
2,629 |
363 |
0 |
14 |
2,747 |
2,369 |
378 |
0 |
14 |
|
Mu50 |
2,629 |
363 |
0 |
14 |
2,754 |
2,370 |
384 |
0 |
14 |
|
MW2 |
2,574 |
302 |
6 |
12 |
2,661 |
2,370 |
285 |
6 |
11 |
|
N315 |
2,538 |
271 |
1 |
11 |
2,660 |
2,362 |
297 |
1 |
11 |
|
NCTC8325 |
2,589 |
315 |
8 |
12 |
2,712 |
2,380 |
323 |
9 |
12 |
|
Newman |
2,579 |
293 |
20 |
12 |
2,775 |
2,391 |
361 |
23 |
14 |
|
RF122 |
2,524 |
205 |
53 |
10 |
2,682 |
2,391 |
238 |
53 |
11 |
|
USA300 |
2,620 |
354 |
0 |
14 |
2,744 |
2,387 |
357 |
0 |
13 |
|
USA300TCH15 |
2,620 |
354 |
0 |
14 |
2,746 |
2,390 |
356 |
0 |
13 |
|
All 17 strains |
3,155 |
755 |
134 |
28 |
46,352 |
40,472 |
5,742 |
138 |
13 |
|
|
|||||||||
|
Core clusters (2,266 here) have one or more representative CDS in each genome examined; unique clusters are represented in only one genome; and distributed clusters in more than one but not all genomes examined. |
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|
Boissy et al. BMC Genomics 2011 12:187 doi:10.1186/1471-2164-12-187 |
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