Table 1

Bacterial Chromosome Sequence Datasets Used for Supragenome Analysis

Genome*

Reference

Sensitivity

MBp

Contigs

%GC

Plasmids

Source


CGSSa00

this publication

untested

2.78

18

32.7

unknown

CGSSa01

this publication

untested

2.86

58

32.6

unknown

elbow arthroplasty infection

CGSSa03

this publication

untested

2.83

68

32.8

unknown

abdominoplasty infection

COL

Gill et al., 2005

MRSA

2.81

1

32.8

1

JH1

Mwangi et al., 2007

VISA

2.91

1

33.0

1

patient on vancomycin

JH9

Mwangi et al., 2007

VISA

2.91

1

33.0

1

patient on vancomycin

MRSA252

Holden et al., 2004

MRSA

2.90

1

32.8

0

MSSA476

Holden et al., 2004

MSSA

2.80

1

32.8

1

Mu3

Neoh et al., 2008

hetero-VISA

2.88

1

32.9

0

Mu50

Kuroda et al., 2001

HA-MRVISA

2.88

1

32.9

1

pus, neonatal surgical infection

MW2

Baba et al., 2002

CA-MRSA

2.82

1

32.8

0

N315

Kuroda et al., 2001

MRSA

2.81

1

32.8

1

pharyngeal smear

NCTC8325

Gillaspy et al., 2006

MRSA

2.82

1

32.9

0

Newman

Baba et al., 2008

MSSA

2.88

1

32.9

0

RF122 (ET3-1)

Herron-Olson et al., 2007

sensitive

2.74

1

32.8

0

mastitis (bovine)

USA300 (FPR3757)

Diep et al., 2006

CA-MRSA

2.87

1

32.8

3

abscess, HIV + i.v. drug user

USA300TCH15

Highlander et al., 2007

CA-MRSA

2.87

1

32.8

1

asymptomatic pediatric patient


*The NCBI's "genus species [subspecies]" name for each strain is either Staphylococcus aureus (for the bovine isolate RF122) or Staphylococcus aureus subsp. aureus. Abbreviations: Antibiotic sensitivity: CA, community-acquired; HA, healthcare-acquired; M, methicillin; R, resistant; S, sensitive; V, vancomycin; VI, V-intermediate; hetero-VI, heterogeneous VI; SA, Staphylococcus aureus.

Boissy et al. BMC Genomics 2011 12:187   doi:10.1186/1471-2164-12-187

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