Table 1

Annotation of unique tags

Unique tags


Annotation of unique tags

22 nt of

3' end*@

22 nt of

5' end*@

Combined

non-redundant^

Total combined

counts^

Additional file(s)#


Repetitive elements

4,651

3,266

7,136

234,381

2 and 3

'Infrastructure' non-coding RNAs

6,907

30

6,929

17,853

2 and 3

miRNAs, miRNA stars and pre-miRNAs

45,623

0

45,623

1,867,113

4

RefSeq

2,431

22

2,448

2,775

5 and 6

Redundant mouse ESTs

5,954

737

6,584

48,465

7 and 8

Unique locus in the genome without annotation

1,377

439

1,752

7,656

9 and 10

Multiple loci in the genome without annotation

3,761

241

3,821

6,039

11 and 12


Total

70,704

4,735

74,293

2,184,282


* No mismatch was allowed during Bowtie analysis.

^ Combined non-redundant values.

@ Redundant values are presented. Redundant values were due to the same unique tag being analysed twice in both 5' and 3' Bowtie analysis.

# Annotation of unique tags based on 3' or 5' end sequences are presented in the additional files 2, 4, 5, 7, 9, 11 and 3, 6, 8, 10, 12, respectively.

Ling et al. BMC Genomics 2011 12:176   doi:10.1186/1471-2164-12-176

Open Data