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Open Access Highly Accessed Research article

Genome structure of cotton revealed by a genome-wide SSR genetic map constructed from a BC1 population between gossypium hirsutum and G. barbadense

Yu Yu12, Daojun Yuan1, Shaoguang Liang1, Ximei Li1, Xiaqing Wang1, Zhongxu Lin1* and Xianlong Zhang1

Author Affiliations

1 National Key Laboratory of Crop Genetic Improvement & National Centre of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, Hubei, PR China

2 Cotton Institute, Xinjiang Academy of Agriculture and Reclamation Science, Shihezi 832000, Xinjiang, PR China

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BMC Genomics 2011, 12:15  doi:10.1186/1471-2164-12-15

Published: 9 January 2011

Additional files

Additional file 1:

EST-SSRs developed from cotton ESTs (The details of marker name, sequence ID, sequence, motif, primer sequences, product size, Tm and putative function are listed).

Format: XLS Size: 4.2MB Download file

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Additional file 2:

Chromosome assignment, marker distribution, length of chromosomes, marker density, gaps and segregation distortion in genetic linkage map constructed with the [(Emian22 × 3-79) × Emian22] BC1 population.

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Additional file 3:

gSSRs derived from transcribed sequences.

Format: XLS Size: 87KB Download file

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Additional file 4:

Description: BLASTX results of SSR sequences.

Format: XLS Size: 654KB Download file

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Additional file 5:

GO classification of mapped loci sequences (level 2): (a) molecular function; (b) cell component; and (c) biology process.

Format: PDF Size: 29KB Download file

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Additional file 6:

GO items of mapped loci sequences (level 3): (a) molecular function; (b) cell component; and (c) biology process.

Format: PDF Size: 48KB Download file

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Additional file 7:

Details of GO results.

Format: XLS Size: 44KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data