Table 3

Frameshift mutations in MmmSC PG1

Mmc CDS N°

Detection of Protein a

Product (Mmc)

MmmSC CDS

Detection of Protein a


0210

-

recG

0022, 0023 and 0024

-

0350

-

CHP

0036 and 0037

-

0370

-

CHP

0040 and 0041

-

0630

-

TMB protein

0075 and 0076

-

1000

+

lipoprotein

0103 and 0104

+

1500

-

lipoprotein

0169, 0170 and 0171

-

1910

-

TMB protein

0227 and 0228

-

1870

+

pepA

0234 and 0235

-

1650

-

CHP

0242 and 0243

-

2550

-

lipoprotein

0285 and 0286

-

2540

-

lipoprotein

0285 and 0286

-

2530

+

TMB protein

0287 and 0288

+

2330

-

protein phosphatase

0307 and 0308

-

2320

-

TMB protein

0309 and 0310

-

2290

-

TMB interrupted by ICE

0314 and 0315

-

3100

-

lipoprotein

0317 and 0318

-

3270

-

TMB and protease

0343 and 0344

-

3280

-

lipoprotein

0345 and 0346

-

3560

-

CHP

0378 and 0379

-

3790

-

TMB protein

0399 and 0400

-

4410

-

putative abc transporteur

0459 and 0460

-

4510

-

TMB protein

0470 and 0471

+

4520

+

TMB and efflux

0472 and 0473

+

4840

-

endopetidase O

0504

-

4930

-

TMB substrate transport

0513, 0514 and 0515

-

4980

-

TMB protein

0521, 0522 and 0523

-

5170

-

TMB protein

0536 and 0537

-

5250

+

CHP

0545 and 0546

-

5570

-

CHP

0589 and 0590

-

5940

-

lipoprotein

0631 and 0632

-

5970

-

TMB protein

0636 and 0637

-

6080

+

CHP

0652 and 0654

-

6100

+

CHP

0656, 0657 and 0658

-

6510

-

TMB protein

0694 and 0695

-

6580

-

TMB protein

0705 and 0706

-

6620

+

lipoprotein

0710 and 0711

+

7000

-

transcriptional regulator

0750 and 0751

-

7010

-

TMB protein

0753 and 0754

-

7200

+

lipoprotein

0772 and 0773

-

7340

+

HAD hydrolase

0792 and 0793

-

7420

-

CHP

0819 and 0820

-

8740

-

TMB protein

0919 and 0920

-

8500

-

lgt

0936 and 0937

-

8860

+

CHP

1012, 1013 and 1014

-

8970

-

TMB protein

1023, 1024 and 1025

-


a "+" indicates that the protein was detected by LC-MS/MS with at least 2 disctinct peptides. MmmSC CDS should be considered as pseudogenes unless there was a sequencing error leading to an artefactual frameshift mutation.

List of CDS with frameshift mutations in the MmmSC PG1 genome as evidenced by comparison with Mmc CDS.

Thiaucourt et al. BMC Genomics 2011 12:114   doi:10.1186/1471-2164-12-114

Open Data