Table 4

Localization of SSRS with respect to putative initiation and termination codons in the Cucurbita unigene dataset

di-SSRs

tri-SSRs

tetra-SSRs

all-SSRs


%

%

%

%

5'-UTR

86

29%

172

12%

102

41%

360

19%

ORF

72

24%

903

65%

89

35%

1064

55%

3'-UTR

105

36%

194

14%

30

12%

329

17%

Other

33

11%

118

9%

31

12%

182

9%

Total

296

100%

1387

100%

252

100%

1935

100%


Unigenes were checked for the presence of the start and stop codons. "Other" means imprecise localization of the SSRs with respect to putative initiation or termination codons.

Blanca et al. BMC Genomics 2011 12:104   doi:10.1186/1471-2164-12-104

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