Table 1

The list of differential expressed genes between head and body of pygmy squid

ProbeName

Fold change (Head / Body)

Regulation (Head / Body)

Annotation in Human

Newly identified in Squid


A_23_P145841_923

1062.9779

down

sclerostin domain containing 1 (SOSTDC1)

O

A_23_P150457_1809

192.46806

down

lymphatic vessel endothelial hyaluronan receptor 1 (LYVE1)

O

A_23_P47616_2403

189.59702

down

folate hydrolase 1 (FOLH1)

O

A_24_P3 19715_ 1231

157.6817

down

disulfide isomerase family A, member 6 (PDIA6)

O

A_23_P214529_3619

144.43817

down

zinc finger protein 192 (ZNF192)

O

A_23_P57401_3729

109.048706

down

leucine-zipper-like transcription regulator 1 (LZTR1)

O

A_23_P143526_508

99.44422

down

S100 calcium binding protein B (S100B)

O

A_23_P78903_1083

92.95913

down

cyclin N-terminal domain containing 2 (CNTD2)

O

A_23_P5415_1270

71.51518

up

NIF3NGG1 interacting factor 3-like 1 (NIF3L1)

O

A_24_P319989_1071

57.572376

up

caveolin 3 (CAV3)

O

A_24_P71244_4544

56.09429

up

phosphoinositide-3-kinase, catalytic, delta polypeptide (PIK3CD)

O

A_23_P116902_1260

51.13099

up

ADP-ribosyltransferase 4 (ART4)

O

A_23_P31536_420

50.551243

down

single-stranded DNA binding protein 1 (SSBP1)

O

A_23_P44257_1197

45.264664

up

COMM domain containing 8 (COMMD8)

O

A_23_P205265_1700

45.247013

down

eukaryotic translation initiation factor 5 (EIF5)

O


Statistically significant differential expressions were extracted, and more than 40 fold change were listed. Sequences of ProbeName can be obtained from Additional file 3. containing probe information.

Ogura et al. BMC Genomics 2010 11(Suppl 4):S9   doi:10.1186/1471-2164-11-S4-S9

Open Data