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This article is part of the supplement: Ninth International Conference on Bioinformatics (InCoB2010): Computational Biology

Open Access Proceedings

PathLocdb: a comprehensive database for the subcellular localization of metabolic pathways and its application to multiple localization analysis

Min Zhao12 and Hong Qu1*

Author Affiliations

1 Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University, Beijing, 100871, P.R. China

2 Key Laboratory of Evolutionary Systematics of Vertebrates, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing, 100044, China

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BMC Genomics 2010, 11(Suppl 4):S13  doi:10.1186/1471-2164-11-S4-S13

Published: 2 December 2010

Additional files

Additional file 1:

The summarized 56 superpathways with completely different locations across organisms are shown in Additional file 1.

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Additional file 2:

The 184 superpathways with partially different localization patterns between organisms are shown in Additional file 2.

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Additional file 3:

The 88 pathways with multiple locations summarized from the multiple locations of their steps are shown in Additional file 3. They provide information on potential existence of transport system between these pathways with different localizations and different steps.

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Additional file 4:

The 45 genes from 17 of the 28 pathways which are detected to be duplicated during evolution are shown in Additional file 4.

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