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This article is part of the supplement: The 2009 International Conference on Bioinformatics & Computational Biology (BioComp 2009)

Open Access Research

Nucleosome structure incorporated histone acetylation site prediction in arabidopsis thaliana

Chen Zhao1, Hui Liu1, Jiang Li1, Youping Deng2* and Tieliu Shi13*

Author Affiliations

1 Center for Bioinformatics and Computational Biology, and The Institute of Biomedical Sciences, School of Life Science, East China Normal University, 500 Dongchuan Road, Shanghai 200241, China

2 Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, MS-39406, USA

3 Shanghai Information Center for Life Sciences, Chinese Academy of Sciences, Shanghai, China, 200031

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BMC Genomics 2010, 11(Suppl 2):S7  doi:10.1186/1471-2164-11-S2-S7

Published: 2 November 2010

Additional files

Additional file 1:

All the lysines associated 3D structure factor

Format: TXT Size: 3KB Download file

Open Data

Additional file 2:

Epsilon N 3d Location and Atom ASA

Format: TXT Size: 4KB Download file

Open Data

Additional file 3:

All the prediction results. All the IDs are named as database name, ID, Protein name. All the lysines in the training set are labeled with P or N in the end.

Format: TXT Size: 10KB Download file

Open Data

Additional file 4:

All the training and testing peptides

Format: TXT Size: 10KB Download file

Open Data