Additional file 2.
Phylogenetic and structural domain analysis of the Sirevirus and classic Ty1/copia retrotransposons. This file contains supplementary Figure S1 showing the phylogenetic analysis of the Ty1/copia retrotransposons based on the RT/RH domains, supplementary Figures S2 and S3 with alignments of the IR arms of each Sirevirus and classic retrotransposon respectively, supplementary Figure S4 showing the distribution of the novel Sirevirus RM boxes, and supplementary Figure S5 with the 5'LTR alignment of the OPIE-2 and PREM-2 Sireviruses.
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Bousios et al. BMC Genomics 2010 11:89 doi:10.1186/1471-2164-11-89