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Open Access Highly Accessed Research article

Transcriptome analysis of the Cryptocaryon irritans tomont stage identifies potential genes for the detection and control of cryptocaryonosis

Yogeswaran Lokanathan12, Adura Mohd-Adnan12*, Kiew-Lian Wan12 and Sheila Nathan12

Author Affiliations

1 School of Biosciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Selangor, Malaysia

2 Malaysia Genome Institute, UKM-MTDC Technology Centre, Selangor, Malaysia

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BMC Genomics 2010, 11:76  doi:10.1186/1471-2164-11-76

Published: 29 January 2010

Additional files

Additional file 1:

BLASTX result, GO annotation, InterProScan result and prediction of potential genes for usage in C. irritans diagnostic and control strategy. The BLASTX results against the non-redundant protein database of NCBI, the GO annotations of the UTs and InterProScan results as performed by the Blast2Go tool, transmembrane regions, GPI-anchor signal and signal peptide prediction.

Format: XLS Size: 721KB Download file

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Additional file 2:

Comparison of BLASTX results against the non-redundant protein database of NCBI, T. thermophila and P. falciparum. The BLASTX results against the non-redundant protein database of NCBI, Tetrahymena thermophila and Plasmodium falciparum.

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Additional file 3:

SUPERFAMILY and Pfam domains of C. irritans, T. thermophila and P. falciparum. Number of protein domain assignments of C. irritans, T. thermophila and P. falciparum according to SUPERFAMILY and Pfam classifications.

Format: XLS Size: 1.5MB Download file

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Additional file 4:

Nucleotide and protein repeats summary. The The frequency of SSR motifs in the C. irritans UTs and number of amino acid repeats identified in the translated UTs by RepSeq tool.

Format: XLS Size: 25KB Download file

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Open Data