Open Access Research article

Heat-shock responsive genes identified and validated in Atlantic cod (Gadus morhua) liver, head kidney and skeletal muscle using genomic techniques

Tiago S Hori1, A Kurt Gamperl1, Luis OB Afonso2, Stewart C Johnson3, Sophie Hubert4, Jennifer Kimball5, Sharen Bowman4 and Matthew L Rise1*

Author Affiliations

1 Ocean Sciences Centre, Memorial University of Newfoundland, St. John's, NL, A1C 5S7, Canada

2 British Columbia Centre for Aquatic Health Sciences, Campbell River, BC, V9W 2C2, Canada

3 Pacific Biological Station, Department for Fisheries and Oceans, Nanaimo, BC, V9T 6N7, Canada

4 The Atlantic Genome Centre, Halifax, NS, B3H 3Z1, Canada

5 Institute for Marine Biosciences, National Research Council of Canada, Halifax, NS, B3H 3Z1, Canada

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BMC Genomics 2010, 11:72  doi:10.1186/1471-2164-11-72

Published: 28 January 2010

Additional files

Additional file 1:

Supplemental Table S1, assembled ESTs (contigs and singletons) in the forward heat-shock SSH libraries. Contains 3 tables (S1 A-C) with information such as supporting annotations, statistics, and contributing EST accession numbers of contigs and singletons found in all 3 forward libraries.

Format: PDF Size: 1.7MB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 2:

Supplemental Table S2, assembled ESTs (contigs and singletons) in the reverse heat-shock SSH libraries. Contains 2 tables (S2A and S2B) with information such as supporting annotations, statistics, and contributing EST accession numbers of contigs and singletons found in the 2 reverse libraries that were sequenced (head kidney and liver).

Format: PDF Size: 676KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 3:

Supplemental Table S3, summary of GO annotation. Contains 4 tables (S3 A-D) with summaries of percentages of total ESTs with GO (biological process) terms for each of 4 SSH libraries.

Format: PDF Size: 86KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data