Table 4

Gene expression associated with physiological trait QTL markers in the subset of F2 mice (n = 16).

Marker

Tissue

Gene


D1Mit113

Adipose tissue

Abcb9, Dub2a, Myo1a, 4930571K23Rik, Pnma2, Tcea2, Fahd2a, Zmiz1, Actr1b, Rab3 d, Zscan2, Myo10, Arhgap8, Mrgpra2, 4933431C10Rik, Oprm1

Liver

Clasp1, 1700009P17Rik, 9130009M17Rik, Wdr40b, Rasal2, Gabra3, Mrgpre, Lsm2, 2610039C10Rik, Zfp354b

Muscle

A630033E08Rik, Pcdhgc4, Kbtbd3, Tbc1d23, Tmem181

Pancreas

Snca, Lrch1, Plcl1, Lpin2, 2410005O16Rik, Abcb9, Rpp30, Sepw1


D11Mit132

Adipose tissue

Rab33a, Homer1, Cntfr, 2310068J16Rik, 4930427A07Rik

Liver

Diablo, Snx29, Galnt3, H13, Dqx1, 4930563E22Rik, 4931429I11Rik, Tmem129, Rasgrp1, 4930452B06Rik, 4930528G23Rik, 4933413J09Rik, Ccdc46, Zfp61, Ypel2, Hs3st3a1, 4933404O12Rik, Lgi3, Cplx2, Pif1, Fkrp, 9530010C24Rik, Rasa4, Rlbp1, Hoxa10, Lysmd2, Mipol1, Hps1, Csl, Fgf18, Mcpt9, Rnf151, Ggt7, Sema6c, 4921511C04Rik, Med13l, 4930432H15Rik, A330021E22Rik, Vwc2, Nfasc, Zic4, Htt, A230001M10Rik, Zic2, Cnnm4, Eif4e2, Tbx19, Kcnab3, Napg

Muscle

Tmem144, Dsc3, Tm9sf1, Fancb, Eif3 d, Gtf2e2, Tph1, 2900022B07Rik, 2010004M13Rik, Mgat3

Pancreas

Ednrb, Epn2, Rnf214, Spata17, 2310047O13Rik, Dnajb4, 4930455H04Rik, Emp2, Cds2, Slc2a13, Cybb, 3110052M02Rik, 4933403F05Rik, Skiv2l2, Klhl13, Myo1b, Supt16 h, Usp9x, Crot, Ogt, P4ha1, Igf1r, Akt1s1, Rabepk, Ptprj, Pml, Chd1, Tspan8, 6430531B16Rik, 4933411K20Rik, Tpst1, Bnip2, Map4k4, Nup50, Fzd8, Olfml2b, Anapc4, Car8, Eif3s10


D4Mit178

Adipose tissue

Trpv4, Azgp1, Klf1, B3galt6, Cgref1, Ptprk, 1110033F14Rik, Gpm6b

Liver

Tcfe2a, Wipi1, Lyrm2, Nudt16l1, Ttf2, Gngt2, 9430051O21Rik, Cd86, Rad23b, Tmem175, Pola1, Ankrd49

Pancreas

Lmbr1, 4932415G12Rik, Clock, Itm2a, Tcf25


D8Mit242

Adipose tissue

Adrb3, Isca1, Cep55, Ppp1r9a

Liver

6530406A20Rik, Lsm6


D3Mit304

Adipose tissue

Rhod, Akt3, Dnmt3a, Grhl1, Dppa3, Rpl7, Krt20, Tm7sf4, Palb2, Hk3, Dusp16, Acad9, Pctk3, Cxcl2, Fabp7, Top3b, Slamf6, Sirpb1

Liver

Exosc9, Kcne3, Acad9, 2610202C22Rik, Dmc1, Mapk8

Muscle

Os9, Coro1c, Gna-rs1, 4921508A21Rik, 5830420C07Rik, H2-T18

Pancreas

4632419K20Rik, Rbbp8, Foxk2, Ccdc7, Stag1, Uba1, Rcor3, Cryl1, Vmn2r29, 2610028H24Rik, Dag1, Itga5


D4Mit312

Adipose tissue

Gjb3, Tnni2, Tnnc2, Ckm, Pvalb, Lamb3, Slc39a3, Mmp3, Atp2a1, 1110008J03Rik, Mark1, Hipk1, Ptcra, Tcap, Mfap4, 2510006D16Rik, C430004E15Rik, Myh4, Ttn, 9030625N01Rik, A930012M21Rik, 2900011L18Rik, Fntb, Dhx29, Mylpf, Tnnt3, Sphk1, 2410127E18Rik, 3110082I17Rik, Marveld3, 9930104L06Rik, Plekhg4, Flnb, Lpin2

Liver

Vmn2r88, Egr2, Ftsj1, 1810059H22Rik, Frmd5, Gng2, Asxl2, P4ha3, Fpr1, Zfp54, 4921515E04Rik, Rab36, Pou2f1, Syt7, 4930552P12Rik, Klk1b1, Map3k4, Pip5k1b, Rims2

Muscle

Rbm26, Efcab4a, Edg5, Jam2, Ptpn14, OTTMUSG, Hif1a, Cdca7l, Ep400, 1110034A24Rik, Bet1l, Ick, Bcl9, Shc4, Adam12, Col9a1

Pancreas

Gnb1, Pdcd6ip, Stub1, Ctrc, Alkbh5, Xpnpep3, Slc25a29, Zswim5, H13, 4930534B04Rik, Ascc2, St3gal6, Rock2, Dnm3os, Bet1l, Lox, Gjb4, Xpc


D11Mit41

Adipose tissue

Ptpn11

Liver

Dusp3

Muscle

Exoc7, Plekhg1

Pancreas

Pja2


D1Mit215

Adipose tissue

Isl1, Plekhf2, Baalc, Dusp18, Lim2, A130004G07Rik, Vstm2l

Liver

Rnd3, Slc7a4, Jarid1b, Clasp1, 1700009P17Rik, Casp3, D730045B01Rik, Foxp4, Nono, 5830411G16Rik, 6030458A19Rik, Dok7, Centb1, Ddef2, 5830418K08Rik, Tmem179, Cux1, 1110001A07Rik, Sp6, Zfp560, Pnmal1, Npb, 7420416P09Rik, Vta1, Crybb1, 9930031P18Rik, Tmem202, 4932409I22Rik, Nav2, Bhlhb8, Skiv2l2, Zfp383, Cxcl9, Akr7a5, Ttc3, Itga3, Gpatch2, Ash2l, Dub2a, Gypa, 2210407C18Rik

Muscle

2810454L23Rik, Ugcgl2, 4930558K02Rik, Cercam, Fbxo10, Rbms3, C130039O16Rik, D130051D11Rik, Ifnar2, Smchd1, Edg6, Fgd5, Sertad3, Mcm4

Pancreas

Sept8, Bloc1s3, Mchr1, Mfhas1, Prpf40a, Morc2a, Slc40a1, Haghl, Grb10, 8430437O03Rik, 2210404J11Rik, Fndc4, Hsd17b4, Sf3b2, Alkbh1, Zfp652, Plcxd2, B430119L13Rik, Pdzk1ip1, Epha10, Spnb2, Lrch1, 9930031P18Rik, Mfap5, Det1, Fcrls, Myh11, Ifna5, Gpx6, Zhx3, 4930503L19Rik, Ascc3l1, Gli3, Tubb5, Pex10, Snf1lk, Cog1, Gm693, Pogz, Dbil5, Capn9, Itm2a, Ttc3, Zfp282, Cldn23, Clec4a2, Eif3s10


D14Mit107

Adipose tissue

Spg11

Liver

Hbb-b1, Gpr146, Hba-a1

Muscle

Shq1


Genes in bold are putative cis-acting transcripts.

Stewart et al. BMC Genomics 2010 11:713   doi:10.1186/1471-2164-11-713

Open Data