Figure 2.

Location analysis of TR4 binding sites in HeLa cells. (A) Shown is a pie chart indicating the distribution of called TR4 peaks. Categories are based on the distance of the peak to the nearest RefSeq gene: 5 d (10 - 100 kb upstream of TSS), distal promoter (2 - 10 kb upstream of TSS), proximal promoter (<2 kb upstream of TSS), gene (exon or intron), 3' proximal (<2 kb downstream of the last exon), 3' distal (2 - 10 kb downstream of the last exon), 3 d (10 - 100 kb downstream of the last exon), and gene desert (>100 kb from a RefSeq gene). (B) Distribution of peaks found within genes. (C) Histogram showing the distribution of peak distances relative to the transcription start site (TSS) of the nearest gene. Peaks were combined in 100 bp bins

O'Geen et al. BMC Genomics 2010 11:689   doi:10.1186/1471-2164-11-689
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