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Open Access Research article

Apoplast proteome reveals that extracellular matrix contributes to multistress response in poplar

Olga Pechanova1, Chuan-Yu Hsu1, Joshua P Adams1, Tibor Pechan2, Lindsay Vandervelde1, Jenny Drnevich3, Sara Jawdy4, Ardeshir Adeli5, Jeffrey C Suttle6, Amanda M Lawrence7, Timothy J Tschaplinski4, Armand Séguin8 and Cetin Yuceer1*

Author Affiliations

1 Department of Forestry, Mississippi State University, Mississippi State, MS 39762 USA

2 Life Sciences and Biotechnology Institute, Mississippi Agricultural and Forestry Experiment Station, Mississippi State University, Mississippi State, MS 39762 USA

3 W.M. Keck Center for Comparative and Functional Genomics, University of Illinois, Urbana, IL 61801 USA

4 Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA

5 USDA-ARS, Mississippi State, MS 39762 USA

6 USDA-ARS, Fargo, ND 58105 USA

7 Electron Microscopy Center, Mississippi State University, Mississippi State, MS 39762 USA

8 Natural Resources Canada, Canadian Forest Service, Laurentian Forestry Centre, 1055 du P.E.P.S., P.O. Box 10380, Stn. Sainte-Foy, Quebec, Quebec G1V 4C7, Canada

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BMC Genomics 2010, 11:674  doi:10.1186/1471-2164-11-674

Published: 29 November 2010

Abstract

Background

Riverine ecosystems, highly sensitive to climate change and human activities, are characterized by rapid environmental change to fluctuating water levels and siltation, causing stress on their biological components. We have little understanding of mechanisms by which riverine plant species have developed adaptive strategies to cope with stress in dynamic environments while maintaining growth and development.

Results

We report that poplar (Populus spp.) has evolved a systems level "stress proteome" in the leaf-stem-root apoplast continuum to counter biotic and abiotic factors. To obtain apoplast proteins from P. deltoides, we developed pressure-chamber and water-displacement methods for leaves and stems, respectively. Analyses of 303 proteins and corresponding transcripts coupled with controlled experiments and bioinformatics demonstrate that poplar depends on constitutive and inducible factors to deal with water, pathogen, and oxidative stress. However, each apoplast possessed a unique set of proteins, indicating that response to stress is partly compartmentalized. Apoplast proteins that are involved in glycolysis, fermentation, and catabolism of sucrose and starch appear to enable poplar to grow normally under water stress. Pathogenesis-related proteins mediating water and pathogen stress in apoplast were particularly abundant and effective in suppressing growth of the most prevalent poplar pathogen Melampsora. Unexpectedly, we found diverse peroxidases that appear to be involved in stress-induced cell wall modification in apoplast, particularly during the growing season. Poplar developed a robust antioxidative system to buffer oxidation in stem apoplast.

Conclusion

These findings suggest that multistress response in the apoplast constitutes an important adaptive trait for poplar to inhabit dynamic environments and is also a potential mechanism in other riverine plant species.