Table 3

Protein functional categories for significantly induced genes by HMF during the lag phase in Saccharomyces cerevisiae

MIPS ID

Functionary category

p-value

Entries


01 Metabolism

01.01.03.03.02

Degradation of proline

7.82E-04

PUT2, PUT1*

01.01.03.05.02

Degradation of arginine

3.94E-04

PUT1, CAR1

01.02.03.01

Sulfate assimilation

3.54E-03

MET3, MET14

14 Protein fate (folding, modification, destination)

14.07.11

Protein processing (proteolytic)

4.05E-09

PRE7, ATG8, RPT2, RPT3, PRE1, PUP3, RPN12, PRE3, PRE6, RPT4, PRE10

14.13

Protein/peptide degradation

3.97E-11

PRE7, SHP1, ATG8, NPL4, RPT2, RPN4, RPT3, RPN9, PRE1, PUP3, DDI1, OTU1, RPN12, ECM29, YHR138c, PRE3, PRE6, RPT4, PRE10

16 Protein with binding function or cofactor requirement (structural or catalytic)

16.19.03

ATP binding

1.52E-03

RPT2, SNQ2, RPT3, PDR15, YOR1, PDR5, RPT4, PDR12

20 Cellular transport, transport facilities and transport routes

20.01.27

Drug/toxin transport

4.70E-06

SNQ2, YOR1, TPO1, PDR5, TPO4, PDR12

20.03.22

Transport ATPases

3.68E-04

SNQ2, YOR1, RSB1, PDR5, PDR12

20.03.25

ABC transporters

1.44E-05

SNQ2, PDR15, YOR1, PDR5, PDR12

32 Cell rescue, defense and virulence

32.05.01.03

Chemical agent resistance

1.73E-05

SNQ2, MAG1, YOR1, YAP1, PDR5


* Proteins in bold indicate functions involved in more than one category

Ma and Liu BMC Genomics 2010 11:660   doi:10.1186/1471-2164-11-660

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