Table 3

6-mers enriched in intronic PCSs of imprinted genes

human imprinted

mouse imprinted


6-mer

score against genomic background

score against autosomal PCSs

score against genomic background

score against autosomal PCSs

matching transcription factor(s)


cgccgc

6.21

4.08

5.91

4.04


cgcgac

3.51

4.31

3.64

3.82


gccgcg

5.79

4.47

5.46

4.39


gccgtc

3.62

4.32

5.37

4.70

ATF, v-Myb


gcgccg

6.02

3.65

9.36

5.92


gcgtcg

4.31

6.65

5.96

6.52

ATF


gggccg

3.82

4.01

3.70

3.99


ggggcg

5.30

4.28

4.75

3.61

R


gtcgcg

10.53

7.32

10.92

5.60


tccgcg

4.51

4.18

4.68

3.96


Hutter et al. BMC Genomics 2010 11:649   doi:10.1186/1471-2164-11-649

Open Data