Table 1

Sequencing and target enrichment results for 8 samples in uniplex, duplex and pentaplex reactions.

Sample

Plexity

Filtered Reads

Mapped to ChrX

Mapped to Target Region

% Mapped to X

% Mapped to Target

Fold Enrichment


A1

Uniplex

16,403,360

4,044,511

3,564,834

25.6

22.5

97

A2

Duplex

2,035,467

730,156

666,572

36.9

33.7

170

B1

Duplex

11,833,641

2,655,666

2,313,476

23.2

20.2

85

A3

Pentaplex

3,037,781

1,131,596

1,036,600

38.1

34.9

180

B2

Pentaplex

3,204,352

1,230,630

1,129,857

39.3

36.0

190

C1

Pentaplex

3,122,661

1,220,017

1,123,547

40.1

36.9

196

D1

Pentaplex

3,687,146

1,944,667

1,778,223

53.8

49.2

324

E1

Pentaplex

3,078,897

1,832,550

1,696,950

60.6

56.1

427


Cummings et al. BMC Genomics 2010 11:641   doi:10.1186/1471-2164-11-641

Open Data