Table 3

Putative sRNAs predicted in silicoa

RNA

Length (nt)

Coordinates

Flanking genes

Genomic contextb

Potential ORFsc


1

39

599871-599910

FTL_0609-FTL_0610

>68|>|984<

-

2

91

865504-865595

FTL_0886-FTL_0887

<1|>|129>

1

3

168

1039023-1039191

FTL_1090-FTL_1091

<4|>|-32>

8, 12*

4

141

1567719-1567860

FTL_1636-FTL_1637

>557|>|488<

2*

5

41

1808414-1808455

FTL_1875-FTL_1876

<349|<|203<

2, 8*

6

89

1251973-1252062

FTL_1313-FTL_1314

>145|<|47<

-

7

181

1240899-1241080

FTL_1303-FTL_1304

>26|<|0<

41

8

125

765395-765520

FTL_0777-FTL_0778

>132|<|0>

2

9

87

508319-508406

FTL_0527-FTL_0528

>149|<|0>

-

10

225

508181-508406

FTL_0527-FTL_0528

>11|<|0>

52*, 32, 37

11

191

361680-361871

FTL_0391-FTL_0392

<476|<|331<

-

12

229

133934-134163

FTL_0131-FTL_0132

<141|<|29<

3

13

92

52224-52316

FTL_0050-FTL_0051

<54|<|0<

7*, 2

14

177

37528-37705

FTL_0035-FTL_0036

>1|>|209>

10*, 4, 24*, 2

15

122

359671-359793

FTL_0389-FTL_0390

>1|>|176<

19, 2, 2

16

390

511941-512331

FTL_0529-FTL_0530

>1|>|-32<

9*, 4*, 7, 41, 7, 16*

17

52

527019-527071

FTL_R0021-FTL_0544

<2|>|8<

-

18

36

1251854-1251890

FTL_1313-FTL_1314

>26|<|219<

-

19

196

1256490-1256686

FTL_1319-FTL_1320

>57|>|128<

8, 9, 13

20

213

1351294-1351507

FTL_1420-FTL_1421

>67|<|0<

11, 19, 24*

21

119

1681442-1681561

FTL_1744-FTL_1745

<33|<|0<

15*, 3*

22

292

1229654-1229946

FTL_R0033-FTL_1289

>2|>|462<

10, 13*, 2, 11

23

228

49421-49649

FTL_0046-FTL_0047

>80|<|49<

2*, 11, 12*, 20

24

240

765280-765520

FTL_0777-FTL_0778

>17|<|0>

12*, 2, 33*


a sRNA candidates, 5' and 3' ends predicted using SIPHT [35].

b The orientation of the sRNA and its flanking genes (in order of gene numbers). ">" designates a gene encoded on the coding strand and "<" designates a gene encoded on the non-coding strand. Numbers outside of the "|" characters denote the distance between the boundaries of the predicted locus and its flanking genes.

c Potential ORFs are indicated by their length in amino acids. * denotes an ORF staring with an alternative start codon.

For sequence of each RNA see Additional File 2.

Postic et al. BMC Genomics 2010 11:625   doi:10.1186/1471-2164-11-625

Open Data