Table 3

The 21 differentially expressed genes in m. longissimus between high and low marbled Hanwoo

Probe ID

1Gene Names

2Fold Change

3P-value (Modified F-test)


MAS5.0

RMA

GCRMA

Mean

MAS5.0

RMA

GCRMA


Bt.5323.1.S1_at

SH3 domain YSC-like 1 (SH3YL1)

0.855

0.738

0.863

0.818

0.0006

0.0002

0.0005

Bt.15675.1.S1_at

ADAM metallopeptidase with thrombospondin type 1 motif, 4 (ADAMTS4)

0.938

0.822

1.121

0.953

0.0037

0.0003

0.0005

Bt.21021.1.S1_at

TBC1 domain family, member 7 (TBC1D7)

0.614

0.543

0.981

0.712

0.0084

0.0028

0.0017

Bt.2933.1.S1_at

Hypothetical protein LOC788205

0.982

0.434

0.591

0.668

0.0013

0.0015

0.0047

Bt.9767.1.S1_a_at

Squalene epoxidase (SQLE)

0.764

0.729

1.115

0.867

0.0048

0.0001

0.00002

Bt.621.1.S1_at

Cytochrome P450, family 51, subfamily A (CYP51A)

0.603

0.503

0.469

0.525

0.0080

0.0081

0.0178

Bt.23903.1.A1_at

Unknown

-0.948

-0.343

-0.299

-0.532

0.0087

0.0062

0.0232

Bt.22362.1.S1_at

SH3-domain kinase binding protein 1 (SH3KBP1)

-0.903

-0.829

-1.152

-0.960

0.0089

0.0090

0.0231

Bt.16752.1.A1_at

ATP binding protein (TXNDC9)

-0.805

-0.595

-0.679

-0.693

0.0123

0.0051

0.0006

Bt.1020.1.S1_at

CDC-like kinase 1 (CDClk1)

-0.398

-0.376

-0.451

-0.408

0.0231

0.0018

0.00005

Bt.19107.2.A1_at

Transcribed locus

-0.432

-0.583

-0.631

-0.548

0.0321

0.0024

0.0012

Bt.28011.1.S1_at

Unknown

-0.781

-1.212

-1.213

-1.066

0.0376

0.0022

0.0051

Bt.22718.1.A1_at

Proteasome (prosome, macropain) activator subunit 4 (PSME4)

-0.309

-0.312

-0.357

-0.326

0.0395

0.0087

0.0048

Bt.19107.1.S1_at

Transcribed locus

-0.515

-0.598

-0.813

-0.642

0.0729

0.0012

0.0045

Bt.25102.1.S1_a_at

Hypothetical LOC509649

-0.431

-0.515

-0.544

-0.496

0.0824

0.0033

0.0046

Bt.22038.1.S1_a_at

Arginyl-tRNAsynthetase (RARs)

-0.194

-0.238

-0.213

-0.215

0.1321

0.0055

0.0045

Bt.21268.1.S2_at

Ribosomal protein S6 kinase, 70 kDa (TUBD1)

0.263

0.471

0.643

0.459

0.1632

0.0045

0.0012

Bt.13342.1.S1_at

Src-associated protein SAW (UTP15)

-0.133

-0.462

-0.555

-0.383

0.2981

0.0011

0.0004

Bt.344.1.S1_at

Major histocompatibility complex, class II (BOLA-DMA)

-0.168

-0.537

-1.081

-0.595

0.3762

0.0069

0.0035

Bt.21827.2.S1_at

Thimetoligopeptidase 1 (THOP1)

-1.071

-0.531

-0.856

-0.818

0.0045

0.0087

0.0162

Bt.21794.1.S1_at

Hypothetical protein LOC777601

1.241

0.863

1.272

1.124

0.0046

0.0050

0.0149


1The 21 differentially expressed genes were selected from genes that were significant in at least 2 probe level summarization methods.

2Fold changes are shown on a log2 scale. Positive values show up regulation in high marbled animals and conversely, negative values show down regulation.

3P-value is set to P = 0.01 in this study.

Lee et al. BMC Genomics 2010 11:623   doi:10.1186/1471-2164-11-623

Open Data