Table 4

Results from GSEA for breast cancer in FF samples. The following 26 gene sets (GO-terms) were common in all the four lists shown in figure-4(v)

Gene Set Description

# of Genes

ES*

NES**

p-value


metalloexopeptidase activity

37

0.5273

1.6927

0.0000


transforming growth factor beta receptor signaling pathway

67

0.4600

1.6388

0.0192


fatty acid metabolic process

116

0.3829

1.5961

0.0000


sterol transport

26

0.4747

1.5879

0.0417


cholesterol transport

25

0.4770

1.5853

0.0208


vitamin metabolic process

22

0.5190

1.5649

0.0204


regulation of insulin secretion

26

0.4652

1.5559

0.0000


regulation of biomineral formation

26

0.4641

1.5288

0.0000


muscle cell differentiation

40

0.4888

1.5192

0.0408


vitamin binding

121

0.3420

1.4857

0.0385


regulation of blood vessel size

43

0.4805

1.4810

0.0408


regulation of tube size

43

0.4805

1.4810

0.0408


BMP signaling pathway

36

0.5195

1.4783

0.0426


regulation of cell proliferation

171

0.3540

1.4709

0.0200


glucose metabolic process

42

0.3829

1.4667

0.0217


blood circulation

46

0.4345

1.4544

0.0204


branching morphogenesis of a tube

55

0.4291

1.4160

0.0208


regulation of hormone secretion

36

0.3898

1.4101

0.0385


magnesium ion binding

418

0.2887

1.3951

0.0000


GTPase binding

85

0.3092

1.3766

0.0000


response to drug

81

0.3105

1.3461

0.0364


carbohydrate binding

301

0.2844

1.3073

0.0204


small GTPase binding

80

0.2944

1.2867

0.0364


protein dimerization activity

433

0.2449

1.2408

0.0196


negative regulation of DNA metabolic process

23

-0.4876

-1.5264

0.0217


nucleosome

87

-0.6222

-1.5847

0.0417


*ES: Enrichment score, **NES: normalized enrichment score

Kibriya et al. BMC Genomics 2010 11:622   doi:10.1186/1471-2164-11-622

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