Table 5

Protein-encoding transposable elements in V. destructor

Class

Family

Number identified


DNA

TcMar-Mariner

6511


DNA

TcMar-Tc1

357


DNA

hAT

58


DNA

TcMar-Fot1

27


DNA

MuDR

12


Helitron

Helitron

338


LINE

R1

981


LINE

L2

93


LINE

CR1

83


LINE

BovB

47


LINE

Jockey

28


LINE

L1

17


LTR

Gypsy

914


LTR

Pao

102


LTR

Copia

74


LTR

Gypsy-Cigr

31


Transposable elements identified with the protein-level repeat masking mode of RepeatMasker [44]. Class abbreviations are DNA, type II DNA transposon; LINE, long interspersed nuclear element; LTR, long-terminal repeat retrotransposon. Family designations are those of RepBase [68].

Cornman et al. BMC Genomics 2010 11:602   doi:10.1186/1471-2164-11-602

Open Data