Table 5

Genes used for microarray validation with qRT-PCR

Gene number

Gene name

Product name

MA fold change (log2)

qRT-PCR fold change (log2)

Center

vs.

non-swarming

Tip

vs.

non-swarming

Center

vs.

non-swarming

Tip

vs.

non-swarming


PA0140

aphF

alkyl hydroperoxide reductase subunit F

A4.5

B1.0

A4.7

B0.7

PA1130

rhlC

rhamnosyltransferase 2

C-0.5

D-1.5

C-0.4

D-2.1

PA1553

ccoO1

probable cytochrome c oxidase subunit

E0.7

F2.1

E0.7

F1.9

PA2158

probable alcohol dehydrogenase (Zn-dependent)

G-1.7

H-4.4

G-1.5

H-4.7

PA2570

lecA

LecA

I-2.0

J-4.5

I-1.5

J-4.3

PA3187

probable ATP-binding component of ABC transporter

K2.6

L1.5

K2.9

L1.8

PA3478

rhlB

rhamnosyltransferase chain B

M-0.9

N-2.3

M-1.4

N-2.9

PA5540

Hypothetical protein

O; 2.0

P0.5

O2.9

P1.0


Letters for each value refer to the corresponding points in figure 2.

Tremblay and D├ęziel BMC Genomics 2010 11:587   doi:10.1186/1471-2164-11-587

Open Data