Open Access Research article

Genetic diversity and striatal gene networks: focus on the heterogeneous stock-collaborative cross (HS-CC) mouse

Ovidiu D Iancu1*, Priscila Darakjian1, Nicole AR Walter1, Barry Malmanger1, Denesa Oberbeck1, John Belknap12, Shannon McWeeney34 and Robert Hitzemann12

Author Affiliations

1 Department of Behavioral Neuroscience, Oregon Health & Science University, Portland OR, USA

2 Research Service, Veterans Affairs Medical Center, Portland, OR 97239, USA

3 Division of Biostatistics, Public Health & Preventative Medicine, Oregon Health & Science University, Portland, OR 97239, USA

4 Division of Bioinformatics and Computational Biology, Medical Informatics & Clinical Epidemiology, Oregon Health & Science University, Portland, OR 97239, USA

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BMC Genomics 2010, 11:585  doi:10.1186/1471-2164-11-585

Published: 19 October 2010

Additional files

Additional file 1:

This file contains additional figures detailing the data processing steps, including outlier sample removal and strip level normalization.

Format: DOC Size: 142KB Download file

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Additional file 2:

This file contains all 5600 genes selected for the network analysis. The genes are identified by EntrezID, gene symbol as well as nuId, an unique identifier for Illumina probes [63]. The module color assignment for each of the three networks is provided for each gene.

Format: CSV Size: 343KB Download file

Open Data

Additional file 3:

This file contains all the GO annotations for the 16 module genes detected in the HS-CC network.

Format: CSV Size: 24KB Download file

Open Data